PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_06950-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 1365aa    MW: 151924 Da    PI: 9.2645
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_06950-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-074176340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W+++E e+++ a +++G++ W+++a  +   Rt  ++
  TRIUR3_06950-P1 41 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 76
                     6*****************99.******999.9997665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-93385IPR009057Homeodomain-like
PfamPF002496.2E-64180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-54180IPR009057Homeodomain-like
CDDcd001675.22E-44276No hitNo description
PfamPF065841.6E-33681781IPR033471DIRP domain
SMARTSM011356.4E-58681782IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1365 aa     Download sequence    Send to blast
MAAPNYMPVI TVGYIISITL LTIDQRNIYL QKKKLSDLGS QWSKDELERF YAAYRKYGKD  60
WRKVAGAVHD RTSDMVEALY NMNRAYLSLP EGTATAAGLI AMMTDHYNIL DGSNSDHESN  120
GSPKTSRKPQ KRGRAKLQSV SKASDTRYPD LLQSQPASSS YGCLSLLKKK RSGASVSLAG  180
AEVSSNNGAP FTFLEQRKTG LRSETCLDLF VGNKPRAVGK RTPRVPVASM YRDDKIGPSN  240
RQAKPDANNG DEEGALAALA LAEVCQRGSP QVSQTSGRSS GQMFLSPGKS IDRKNADSEM  300
GSSKMHGFQV DADYPEGSLG SREAETGDYP KDASYFLNNE GSASGKSKPK VKRSQKRRKK  360
AAHKTDDQFE DDREACSGTE EGCSSRKAKD ISDLDVFGSK GSWPSNKSNK RSRQLFFGDE  420
LSALDALHTL ADISVNILQP SSIAESESSA QFKDGSKDNE SDDKPSVPAA VSLFDKKDKP  480
RKTKKIKRQS EIASNEVVTR KKARLSKDHH HDGSTSDVKQ DDCKCGVKME KKKRKSSTLK  540
ISKDEKNTLK DSEKTEASAE EGKVSSNKGR HTHVSPVSKQ NKSKAQESSP AHADFGKEAM  600
DTVDMTENAI TQQSDSASKS KSRRKLGILK ALAPESKPAE GADDSCDNVS YPVNNVTELK  660
DKLSHCLSSR FLRRWCMSEW FYSAIDYPWF AKSEFVEYLN HVKLGHVPRL TRVEWGVIRS  720
SLGKPRRLSK QFLQEEREKL SQYRESVRQH YAELQSGVRE GLPTDLARPL AVGQRVIACH  780
PKTRELHDGG VLTVDRSRCR VQFDRPELGV EFVMVAVTDP NMVIVDEIVT LQDIDCMPLH  840
PLENFPESLR RQNIVNKYYS SFSEVKFEDR SKEYGGGGAP RFIPNGDAFD SIAQAKTTAN  900
EATVAAQQAM YGQPCTLSQI QEREADIRAL AELSRALDKK ASLCLEFYLM LWDIYSTQEA  960
LLVELRHMNE EVSGKQKDGE IIRDLEHFRK QYAMVLVQLR DSNDHVASAL LCLRQRNTFH  1020
GQPTQSYPNK SMENGGASNR TPDPSSNLFG YINQESGSQV MEIIETSRSK AKTMVDVAVQ  1080
AMCKVSEGEN AFAKIGEALD NLNLRGTGSG SSILGIRRIP PDSGQANSDN SASGRFDPAA  1140
ATNNISSPRV LPNGSDSEAQ FPSELISSCV ATILMIQNCT EKQYHPAEVA HILDSALSRL  1200
QPCSSQNDTW LGDAPLATQY PSLYRIVQRR EALVATVLQS IPLNIQFRRV LVGDRWKAWL  1260
HLVRRLMGVQ LNPQPDQLWW KLTRSGEFTV KSMYIDILNS SVIPSFKEDW KVKVLFRATA  1320
LIRMWSLLTP TEARKRLVTG SVRWEMVARD IFNRFGWRSC NRIGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347359KPKVKRSQKRRKK
2350356VKRSQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658640.0AK365864.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2038G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233693.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X1
RefseqXP_010233694.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X1
TrEMBLM7ZWV80.0M7ZWV8_TRIUA; Protein ALWAYS EARLY 3
STRINGBRADI3G01340.30.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding